Index

A

AD_FILE_NUMBER_SUFFIX (in module id3c.utils.flyscan_repair)

C

cat (in module id3c.startup)

configure_adsimdet() (in module id3c.plans.flyscan_3idc)

D

dcu_buff_free (id3c.devices.area_detector.EigerDetectorCam_V34 attribute)

DEFAULT_MD (in module id3c.plans.sim_plans) ds (id3c.devices.laser_optics.LaserOptics attribute)

E

eiger2 (in module id3c.startup) EigerDetectorCam_V34 (class in id3c.devices.area_detector)

ENTRY_IDENTIFIER (in module id3c.utils.flyscan_repair) EPICS_EPOCH_OFFSET_S (in module id3c.utils.flyscan_3idc_analysis) extra_logging_configs_path (in module id3c.startup)

F

file_extension (in module id3c.callbacks.demo_spec_callback) file_number_sync (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) file_number_write (id3c.devices.area_detector.EigerDetectorCam_V34 attribute)

fixed_exp_at_det_steps() (in module id3c.user.s3idc_plans.setup_june_26) flyscan() (in module id3c.plans.flyscan_3idc) fw_clear (id3c.devices.area_detector.EigerDetectorCam_V34 attribute)

H

hdf_timestamp_semantic_diagnostic() (in module id3c.utils.flyscan_3idc_analysis)

I

iconfig (in module id3c.startup) iconfig_path (in module id3c.startup) id3c module id3c.callbacks module id3c.callbacks.demo_nexus_callback module id3c.callbacks.demo_spec_callback module id3c.configs module id3c.devices module id3c.devices.area_detector module id3c.devices.interlocked_motor module id3c.devices.laser_optics module id3c.devices.omega_laser_interlock module id3c.plans module id3c.plans.ad_plugins module id3c.plans.flyscan_3idc module id3c.plans.sim_plans module id3c.startup module id3c.suspenders module id3c.tests module id3c.tests.test_ad_plugins module id3c.tests.test_check_ad_files_symlink module id3c.tests.test_check_cam_armed module

id3c.tests.test_effective_num_images module id3c.tests.test_ensure_ad_files_symlink module id3c.tests.test_expected_frame_count module id3c.tests.test_external_link_target module id3c.tests.test_flyscan_3idc_analysis module id3c.tests.test_flyscan_repair module id3c.tests.test_pair_frames_from_ad_file module id3c.tests.test_path_templates module id3c.tests.test_wait_for_openable module id3c.tests.test_write_flyscan_data module id3c.user module id3c.user.s3idc_plans module id3c.user.s3idc_plans.setup_june_26 module id3c.utils module id3c.utils.flyscan_3idc_analysis module id3c.utils.flyscan_repair module IMAGES_ADDR (in module id3c.utils.flyscan_repair) in_position (id3c.devices.laser_optics.LaserOptics attribute) init_specwriter_with_RE() (in module id3c.callbacks.demo_spec_callback) initialize (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) instrument_path (in module id3c.startup) interlock (id3c.devices.interlocked_motor.InterlockedEpicsMotor attribute) interlock_description (id3c.devices.interlocked_motor.InterlockedEpicsMotor attribute) interlock_watch (id3c.devices.interlocked_motor.InterlockedEpicsMotor attribute) InterlockedEpicsMotor (class in id3c.devices.interlocked_motor) is_out (id3c.devices.laser_optics.LaserOptics property)

L

LaserOptics (class in id3c.devices.laser_optics) link_0 (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) link_1 (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) link_2 (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) link_3 (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) logger (in module id3c.callbacks.demo_nexus_callback) (in module id3c.callbacks.demo_spec_callback) (in module id3c.devices.interlocked_motor) (in module id3c.devices.laser_optics) (in module id3c.devices.omega_laser_interlock) (in module id3c.plans.sim_plans) (in module id3c.startup) (in module id3c.utils.flyscan_3idc_analysis) (in module id3c.utils.flyscan_repair)

M

main() (in module id3c.utils.flyscan_repair) module id3c id3c.callbacks id3c.callbacks.demo_nexus_callback id3c.callbacks.demo_spec_callback id3c.configs id3c.devices id3c.devices.area_detector id3c.devices.interlocked_motor id3c.devices.laser_optics id3c.devices.omega_laser_interlock id3c.plans id3c.plans.ad_plugins id3c.plans.flyscan_3idc id3c.plans.sim_plans id3c.startup id3c.suspenders id3c.tests id3c.tests.test_ad_plugins id3c.tests.test_check_ad_files_symlink id3c.tests.test_check_cam_armed id3c.tests.test_effective_num_images id3c.tests.test_ensure_ad_files_symlink id3c.tests.test_expected_frame_count id3c.tests.test_external_link_target id3c.tests.test_flyscan_3idc_analysis id3c.tests.test_flyscan_repair id3c.tests.test_pair_frames_from_ad_file id3c.tests.test_path_templates id3c.tests.test_wait_for_openable id3c.tests.test_write_flyscan_data id3c.user id3c.user.s3idc_plans id3c.user.s3idc_plans.setup_june_26 id3c.utils id3c.utils.flyscan_3idc_analysis id3c.utils.flyscan_repair

MotionInterlock move() (id3c.devices.interlocked_motor.InterlockedEpicsMotor method) move_out() (id3c.devices.laser_optics.LaserOptics method)

N

newSpecFile() (in module id3c.callbacks.demo_spec_callback)

nxwriter (in module id3c.startup) nxwriter_init() (in module id3c.callbacks.demo_nexus_callback)

O

offset (id3c.devices.area_detector.EigerDetectorCam_V34 attribute) omega_fly() (in module id3c.user.s3idc_plans.setup_june_26) omega_fly_at_det_steps() (in module id3c.user.s3idc_plans.setup_june_26)

omega_fly_at_sam_steps() (in module id3c.user.s3idc_plans.setup_june_26) out_position (id3c.devices.laser_optics.LaserOptics attribute) out_status (id3c.devices.laser_optics.LaserOptics attribute)

P

pair_frames_to_positions() (in module id3c.utils.flyscan_3idc_analysis)

pair_frames_to_positions_from_ad_file() (in module id3c.utils.flyscan_3idc_analysis) plugin() (in module id3c.tests.test_ad_plugins)

R

read_ad_plugin_components() (in module id3c.plans.ad_plugins) read_run_uid() (in module id3c.utils.flyscan_repair)

repair_master_file() (in module id3c.utils.flyscan_repair) REPORTABLE_KINDS (in module id3c.plans.ad_plugins) resolve_external_file() (in module id3c.utils.flyscan_repair)

S

set_ad_plugin_components() (in module id3c.plans.ad_plugins) settle_time (id3c.devices.laser_optics.LaserOptics attribute) setup_omega_laser_interlock() (in module id3c.devices.omega_laser_interlock) sim_count_plan() (in module id3c.plans.sim_plans) sim_print_plan() (in module id3c.plans.sim_plans)

sim_rel_scan_plan() (in module id3c.plans.sim_plans) spec_comment() (in module id3c.callbacks.demo_spec_callback) specwriter (in module id3c.callbacks.demo_spec_callback) (in module id3c.startup) sweep_xy_integrate_one() (in module id3c.user.s3idc_plans.setup_june_26) sweep_xy_integrate_steps() (in module id3c.user.s3idc_plans.setup_june_26)

T

test_ad_count_used_even_when_metadata_unusable() (in module id3c.tests.test_expected_frame_count) test_ad_file_count_is_authoritative() (in module id3c.tests.test_expected_frame_count) test_armed_state_returns_immediately() (in module id3c.tests.test_check_cam_armed) test_array_from_ds_handles_dataframe_like() (in module id3c.tests.test_flyscan_3idc_analysis) test_array_from_ds_handles_xarray_like() (in module id3c.tests.test_flyscan_3idc_analysis) test_array_from_ds_missing_key_raises() (in module id3c.tests.test_flyscan_3idc_analysis) test_basic_constant_velocity_recovery() (in module id3c.tests.test_pair_frames_from_ad_file) test_cli_main_failure_returns_1() (in module id3c.tests.test_flyscan_repair) test_cli_main_success() (in module id3c.tests.test_flyscan_repair) test_creates_symlink_when_target_exists() (in module id3c.tests.test_ensure_ad_files_symlink) test_crossover_at_max_over_unlimited() (in module id3c.tests.test_effective_num_images) test_custom_ad_files_root() (in module id3c.tests.test_external_link_target) test_custom_dataset_paths() (in module id3c.tests.test_pair_frames_from_ad_file) test_detector_state_get_failure_is_safe() (in module id3c.tests.test_check_cam_armed) test_dry_run_does_not_write() (in module id3c.tests.test_flyscan_repair) test_each_error_state_raises() (in module id3c.tests.test_check_cam_armed) test_epics_to_unix_epoch_conversion() (in module id3c.tests.test_pair_frames_from_ad_file) test_error_after_initializing_still_raises() (in module id3c.tests.test_check_cam_armed) test_error_state_raises_with_status_message() (in module id3c.tests.test_check_cam_armed) test_eventual_acquire_after_polls() (in module id3c.tests.test_check_cam_armed) test_existing_ad_files_directory_is_accepted_silently() (in module id3c.tests.test_check_ad_files_symlink) test_existing_ad_files_symlink_is_accepted_silently() (in module id3c.tests.test_check_ad_files_symlink) test_existing_plain_directory_is_accepted() (in module id3c.tests.test_ensure_ad_files_symlink) test_falls_back_to_num_frames_when_ad_file_missing() (in module id3c.tests.test_expected_frame_count) test_falls_back_to_num_frames_when_no_ad_path() (in module id3c.tests.test_expected_frame_count) test_falls_back_when_ad_file_lacks_uid_dataset() (in module id3c.tests.test_expected_frame_count) test_falls_back_when_template_does_not_prefix_full_file_name() (in module id3c.tests.test_external_link_target) test_falls_back_when_template_missing() (in module id3c.tests.test_external_link_target) test_handles_template_without_trailing_slash() (in module id3c.tests.test_external_link_target) test_hdf_timestamp_diagnostic_flags_noisy_data() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_flags_sparse_data() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_picks_closest_with_noise() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_picks_end_acquire() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_picks_end_period() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_picks_start_acquire() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_raises_when_no_in_scan_frames() (in module id3c.tests.test_flyscan_3idc_analysis) test_hdf_timestamp_diagnostic_returns_expected_dict_keys() (in module id3c.tests.test_flyscan_3idc_analysis) test_helper_never_creates_the_symlink() (in module id3c.tests.test_check_ad_files_symlink) test_idempotent_rewrite() (in module id3c.tests.test_write_flyscan_data) test_idempotent_when_link_already_present() (in module id3c.tests.test_ensure_ad_files_symlink) test_image_number_is_one_based() (in module id3c.tests.test_pair_frames_from_ad_file) test_interpolate_positions_dedups_duplicate_image_numbers() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_drops_extrapolation() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_empty_hdf_returns_empty_frame() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_handles_duplicate_timestamps() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_handles_out_of_order_motor_stream() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_in_scan_filter_uses_start_acquire() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_requires_two_motor_samples() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_shape_mismatch_raises() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_simple_linear() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_three_phase_arithmetic_at_constant_velocity() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_trims_outside_scan_range() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_widening_admits_leading_edge_frame() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_widening_admits_trailing_edge_frame() (in module id3c.tests.test_flyscan_3idc_analysis) test_interpolate_positions_widening_rejects_all_when_motor_never_in_range() (in module id3c.tests.test_flyscan_3idc_analysis) test_long_period_caps_at_max_seconds() (in module id3c.tests.test_effective_num_images) test_mismatched_lengths_raise() (in module id3c.tests.test_pair_frames_from_ad_file) test_missing_ad_files_emits_warning_with_ln_s_command() (in module id3c.tests.test_check_ad_files_symlink) test_missing_read_path_template_uses_placeholder() (in module id3c.tests.test_check_ad_files_symlink) test_missing_timestamp_dataset_raises() (in module id3c.tests.test_pair_frames_from_ad_file)

test_missing_uid_raises() (in module id3c.tests.test_flyscan_repair) test_missing_unique_id_dataset_raises() (in module id3c.tests.test_pair_frames_from_ad_file) test_n_frames_expected_omitted_when_none() (in module id3c.tests.test_write_flyscan_data) test_never_raises_on_bad_run_object() (in module id3c.tests.test_expected_frame_count) test_never_raises_on_unwritable_master_dir() (in module id3c.tests.test_ensure_ad_files_symlink) test_observed_failing_combo_is_capped() (in module id3c.tests.test_effective_num_images) test_pair_frames_to_positions_against_observed_run_shape() (in module id3c.tests.test_flyscan_3idc_analysis) test_pair_frames_to_positions_end_to_end() (in module id3c.tests.test_flyscan_3idc_analysis) test_pair_frames_to_positions_index_is_timestamp() (in module id3c.tests.test_flyscan_3idc_analysis) test_pair_frames_to_positions_missing_metadata_raises() (in module id3c.tests.test_flyscan_3idc_analysis) test_pair_frames_to_positions_missing_motor_stream_raises() (in module id3c.tests.test_flyscan_3idc_analysis) test_pair_frames_to_positions_trims_taxi_frames() (in module id3c.tests.test_flyscan_3idc_analysis) test_read_falls_back_to_underscore_attr() (in module id3c.tests.test_path_templates) test_read_marks_readonly_access() (in module id3c.tests.test_ad_plugins) test_read_path_template_primary() (in module id3c.tests.test_path_templates) test_read_prints_table_with_expected_rows() (in module id3c.tests.test_ad_plugins) test_read_run_uid() (in module id3c.tests.test_flyscan_repair) test_recovers_frames_that_ca_path_would_drop() (in module id3c.tests.test_pair_frames_from_ad_file) test_repair_is_idempotent() (in module id3c.tests.test_flyscan_repair) test_repair_writes_flyscan_data() (in module id3c.tests.test_flyscan_repair) test_resolve_external_file_from_link() (in module id3c.tests.test_flyscan_repair) test_resolve_external_file_from_metadata() (in module id3c.tests.test_flyscan_repair) test_returns_at_least_one() (in module id3c.tests.test_effective_num_images) test_returns_none_when_absent() (in module id3c.tests.test_path_templates) test_returns_none_when_no_source() (in module id3c.tests.test_expected_frame_count) test_returns_none_when_num_frames_is_none() (in module id3c.tests.test_expected_frame_count) test_returns_plain_int() (in module id3c.tests.test_expected_frame_count) test_select_includes_config_normal_hinted_readonly() (in module id3c.tests.test_ad_plugins) test_select_is_sorted() (in module id3c.tests.test_ad_plugins) test_select_skips_omitted() (in module id3c.tests.test_ad_plugins) test_set_emits_one_mv_per_call() (in module id3c.tests.test_ad_plugins) test_set_no_kwargs_yields_null_message() (in module id3c.tests.test_ad_plugins) test_set_rejects_omitted_kwarg() (in module id3c.tests.test_ad_plugins) test_set_rejects_readonly_kwarg() (in module id3c.tests.test_ad_plugins) test_set_rejects_unknown_kwarg() (in module id3c.tests.test_ad_plugins) test_set_reports_readonly_before_unknown() (in module id3c.tests.test_ad_plugins) test_set_values_propagate_through_messages() (in module id3c.tests.test_ad_plugins) test_short_period_caps_at_unlimited_frames() (in module id3c.tests.test_effective_num_images) test_status_message_get_failure_is_safe() (in module id3c.tests.test_check_cam_armed) test_strips_write_path_template_prefix() (in module id3c.tests.test_external_link_target) test_symlink_name_follows_detector_name() (in module id3c.tests.test_ensure_ad_files_symlink) test_template_equal_to_full_file_name_yields_empty_suffix() (in module id3c.tests.test_external_link_target) test_timeout_does_not_raise() (in module id3c.tests.test_check_cam_armed) test_unresolvable_ad_file_raises() (in module id3c.tests.test_flyscan_repair) test_uses_underscore_write_path_template_fallback() (in module id3c.tests.test_external_link_target) test_virtual_dataset_selects_correct_frames() (in module id3c.tests.test_write_flyscan_data) test_wait_for_openable_append_mode_works() (in module id3c.tests.test_wait_for_openable) test_wait_for_openable_respects_timeout_budget() (in module id3c.tests.test_wait_for_openable) test_wait_for_openable_returns_false_for_missing_file() (in module id3c.tests.test_wait_for_openable) test_wait_for_openable_returns_false_for_non_hdf5_path() (in module id3c.tests.test_wait_for_openable) test_wait_for_openable_returns_true_for_existing_file() (in module id3c.tests.test_wait_for_openable) test_warning_fires_again_when_master_dir_changes() (in module id3c.tests.test_check_ad_files_symlink) test_warning_fires_only_once_per_master_dir_target_combination() (in module id3c.tests.test_check_ad_files_symlink) test_warns_when_target_does_not_exist() (in module id3c.tests.test_ensure_ad_files_symlink) test_warns_when_target_unknown() (in module id3c.tests.test_ensure_ad_files_symlink) test_write_falls_back_to_underscore_attr() (in module id3c.tests.test_path_templates) test_write_path_template_primary() (in module id3c.tests.test_path_templates) test_writes_expected_layout() (in module id3c.tests.test_write_flyscan_data) test_zero_period_clamped() (in module id3c.tests.test_effective_num_images) tolerance (id3c.devices.laser_optics.LaserOptics attribute) TS_DSET (in module id3c.tests.test_flyscan_repair)

U

UID (in module id3c.tests.test_flyscan_repair) UID_DSET (in module id3c.tests.test_expected_frame_count) (in module id3c.tests.test_flyscan_repair)

us (id3c.devices.laser_optics.LaserOptics attribute)

W

write_flyscan_data() (in module id3c.utils.flyscan_3idc_analysis)